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I have had the same problem with pstotext. But when we upgraded our system from kernel 2.2.14-5.0 to 2.4.25 on a Linux system all problems with external binaries (also pdftotext) disappeared! By the way: I foud out that pdftotext is a bit faster, you do not need to install ghostscript and the recognized words are more. Just do a full install of xpdf (not only the pdftotext-file).
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