The update section is meant to update what is already there, whether updating a page or directory. To get a site-wide reindex including new pages, just use the textbox. If you empty the tempspider table, then you cannot pick up where the spider left off. If your connection breaks, and there is content left in the tempspider table, you might want to look at the table and start the indexing again by using a link formed from the tempspider table where indexed is zero.
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