First of all, welcome to the forum, jasonm0928. We're glad to have you here!
I'm not sure just what kind of search you're asking to do. Is it a subdomain? Everything in a sub-folder? Something else?
Don't know if this will help or not, but if you want to exclude particular links from being indexed, you can include the following comments
on their own line above and below the links you want to exclude:
PHP Code:
<!-- phpdigExclude -->
your link(s) to exclude go here
<!-- phpdigInclude -->
If I'm misunderstanding your problem, please elaborate a little further. Thanks.